Acidaminococcus fermentans strain pGA-4

Coccusanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Negativicutes

Order

Acidaminococcales

Family

Acidaminococcaceae

Genus

Acidaminococcus

Description

Acidaminococcus fermentans strain pGA-4 is a Gram-negative coccus that exhibits strict anaerobic growth requirements. This microbe is part of a genus known for its ability to ferment amino acids, which plays an important role in various ecological niches, particularly in anaerobic environments such as the human gastrointestinal tract. The spherical morphology of Acidaminococcus fermentans indicates its adaptation to life in low-oxygen conditions, where it likely participates in the degradation of organic matter and the fermentation of nutrients. The anaerobic nature of this strain suggests its potential involvement in metabolic pathways that contribute to the overall microbial community dynamics within its habitat. By fermenting amino acids, Acidaminococcus fermentans strain pGA-4 not only generates energy for its own growth but may also influence the availability of nutrients for other anaerobic microorganisms, thereby shaping the microbial ecosystem. Furthermore, the activity of Acidaminococcus fermentans in amino acid fermentation may play a role in maintaining gut health by contributing to the production of short-chain fatty acids, which are known to have beneficial effects on host metabolism and immune function. This highlights the potential significance of Acidaminococcus fermentans strain pGA-4 in both microbial ecology and health-related aspects of anaerobic environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassNegativicutes
OrderAcidaminococcales
FamilyAcidaminococcaceae
GenusAcidaminococcus
SpeciesAcidaminococcus fermentans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidaminococcus fermentans strain pGA-4

Accession NumberFOWJ00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2107 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Prga-formyltransferaseSAMN02910455_01687Not Available-1792066 - 179300434103.5
Riia-riib membrane-associated proteinSAMN02910455_01688Not Available-1793001 - 179347717171.7
Dna-binding hth domain-containing proteinSAMN02910455_01689Not Available-1793841 - 17940237180.7
hypothetical proteinSAMN02910455_01690Not Available-1794245 - 179482621339.5
Hypothetical proteinSAMN02910455_01691Not Available-1794832 - 179542822242.0
hypothetical proteinSAMN02910455_01692Not Available-1795388 - 179574113164.0
hypothetical proteinSAMN02910455_01693Not Available-1795714 - 179599510511.9
Short tail fiber proteinSAMN02910455_01694Not Available-1796077 - 179674223599.8
hypothetical proteinSAMN02910455_01695Not Available-1796739 - 17968734947.03
hypothetical proteinSAMN02910455_01696Not Available-1796866 - 179730315968.4

Displaying genes 1 – 10 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

278 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001987trans-glutaconateC5H4O4Chemical structure of trans-glutaconateNot available
Average128.084Da
Monoisotopic128.0120558Da

Displaying 1–10 of 278 metabolites