Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_102169 | Not Available | Positive | 1068196 - 1071657 | 129086.0 |
| starch-binding associating with outer membrane | SAMN05444682_102170 | Not Available | Positive | 1071668 - 1073431 | 66058.6 |
| hypothetical protein | SAMN05444682_102171 | Not Available | Positive | 1073508 - 1075949 | 90593.3 |
| alpha-d-xyloside xylohydrolase | SAMN05444682_102172 | Not Available | Positive | 1075958 - 1078117 | 81889.4 |
| hypothetical protein | SAMN05444682_102173 | Not Available | Positive | 1078139 - 1080967 | 105714.0 |
| protein of unknown function | SAMN05444682_102174 | Not Available | Positive | 1081056 - 1082828 | 67270.3 |
| excinuclease abc subunit c | SAMN05444682_102175 | Not Available | Negative | 1082817 - 1084622 | 69758.4 |
| penicillin-binding protein 1a | SAMN05444682_102176 | Not Available | Negative | 1084647 - 1086890 | 84527.1 |
| hypothetical protein | SAMN05444682_102177 | Not Available | Negative | 1086914 - 1089742 | 107513.0 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05444682_102178 | Not Available | Positive | 1089913 - 1090797 | 32295.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
