Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN05444682_10249 | Not Available | Positive | 932455 - 934005 | 57169.5 |
| hypothetical protein | SAMN05444682_10250 | Not Available | Negative | 933977 - 934069 | 3306.08 |
| manganese/zinc/iron transport system substrate-binding protein | SAMN05444682_10251 | Not Available | Positive | 934139 - 935062 | 33426.3 |
| manganese/zinc/iron transport system atp-binding protein | SAMN05444682_10252 | Not Available | Positive | 935059 - 935847 | 28930.1 |
| manganese/zinc/iron transport system permease protein | SAMN05444682_10253 | Not Available | Positive | 935862 - 937151 | 47154.3 |
| manganese/zinc/iron transport system permease protein | SAMN05444682_10254 | Not Available | Positive | 937172 - 938050 | 31411.6 |
| phnb protein | SAMN05444682_10255 | Not Available | Negative | 938060 - 938482 | 15581.0 |
| Trna-leu | Not Available | Not Available | Positive | 938707 - 938791 | Not Available |
| starch-binding associating with outer membrane | SAMN05444682_10257 | Not Available | Negative | 938964 - 940523 | 59047.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_10258 | Not Available | Negative | 940536 - 943589 | 113070.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
