Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose isomerase | SAMN05444682_10239 | Not Available | Positive | 919381 - 920712 | 49652.1 |
| glycine/d-amino acid oxidase | SAMN05444682_10240 | Not Available | Negative | 920771 - 921988 | 45784.5 |
| hypothetical protein | SAMN05444682_10241 | Not Available | Positive | 922026 - 922652 | 23974.7 |
| hypothetical protein | SAMN05444682_10242 | Not Available | Negative | 922641 - 923387 | 27773.0 |
| holliday junction dna helicase subunit ruvb | SAMN05444682_10243 | Not Available | Negative | 923464 - 924486 | 37621.4 |
| dolichol-phosphate mannosyltransferase | SAMN05444682_10244 | Not Available | Negative | 924533 - 925258 | 27784.7 |
| proton-dependent oligopeptide transporter, pot family | SAMN05444682_10245 | Not Available | Negative | 925295 - 926896 | 59286.1 |
| hypothetical protein | SAMN05444682_10246 | Not Available | Negative | 927021 - 927920 | 34027.4 |
| acetyl-coa c-acetyltransferase | SAMN05444682_10247 | Not Available | Negative | 927927 - 929102 | 40492.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_10248 | Not Available | Positive | 929330 - 932443 | 114238.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
