Parapedobacter indicus strain RK1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter indicus strain RK1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This strain is part of the genus Parapedobacter, which is known for its ecological significance in various environments. The accession number for strain RK1 is FOQO00000000.1, which serves as a reference for genomic data and further research. The Gram-negative classification of Parapedobacter indicus indicates that it possesses an outer membrane and a distinctive cell wall structure, which may have implications for its interactions with other microorganisms and its ability to survive in different habitats. The rod shape is typical of many bacteria and can influence motility and colonization capabilities. Given its unique traits, Parapedobacter indicus strain RK1 may play a role in specific ecological niches, particularly in soil or aquatic environments where its metabolic processes could contribute to nutrient cycling. The presence of a single replicon suggests a streamlined genomic organization, which may facilitate rapid adaptability to environmental changes. This adaptability could be crucial for survival in competitive microbial communities. Understanding the characteristics of Parapedobacter indicus strain RK1 can provide insights into its ecological role and potential applications in biotechnology or environmental management. Further research could elucidate its specific functions within microbial ecosystems and its interactions with other species.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter indicus
Strainstrain RK1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter indicus strain RK1 genome assembly, contig:

Gene Summary

Adenine Count

1604354 bp

Thymine Count

1596710 bp

Guanine Count

1452045 bp

Cytosine Count

1501904 bp

Genome Length

6155226 bp

Protein-coding Genes

5135 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prephenate dehydrataseSAMN05444682_10219Not AvailablePositive895541 - 89637131228.5
3-deoxy-d-arabinoheptulosonate-7-phosphate synthaseSAMN05444682_10220Not AvailablePositive896411 - 89751741136.6
3-phosphoshikimate 1-carboxyvinyltransferaseSAMN05444682_10221Not AvailablePositive897517 - 89877645327.4
chorismate synthaseSAMN05444682_10222Not AvailablePositive898848 - 89995139364.7
glucokinaseSAMN05444682_10223Not AvailablePositive899935 - 90080131887.8
peptide methionine sulfoxide reductase msra/msrbSAMN05444682_10224Not AvailablePositive900988 - 90212442282.5
pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (e1) componentSAMN05444682_10225Not AvailableNegative902121 - 90454189860.7
4fe-4s dicluster domain-containing proteinSAMN05444682_10226Not AvailablePositive904793 - 90610049102.2
cysteine-rich domain-containing proteinSAMN05444682_10227Not AvailablePositive906157 - 90694829468.6
transcriptional regulator, hxlr familySAMN05444682_10228Not AvailableNegative907012 - 90735312866.8

Displaying genes 801 – 810 of 5188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.