Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase, sigma subunit, sigy | SAMN05444682_1029 | Not Available | Negative | 884172 - 884705 | 20689.1 |
| probable oxidoreductase, llm family | SAMN05444682_10210 | Not Available | Positive | 884910 - 885944 | 37842.7 |
| putative abc transport system substrate-binding protein | SAMN05444682_10211 | Not Available | Negative | 885941 - 886930 | 35517.1 |
| nte family protein | SAMN05444682_10212 | Not Available | Positive | 886969 - 887751 | 28721.8 |
| uncharacterized membrane protein ygdd, tmem256/duf423 family | SAMN05444682_10213 | Not Available | Positive | 887775 - 888146 | 13380.7 |
| nadh dehydrogenase | SAMN05444682_10214 | Not Available | Negative | 888123 - 889421 | 48101.6 |
| gntr family transcriptional regulator / mocr family aminotransferase | SAMN05444682_10215 | Not Available | Negative | 889804 - 891300 | 55795.1 |
| negative transcriptional regulator, paib family | SAMN05444682_10216 | Not Available | Positive | 891373 - 891984 | 23508.3 |
| protein n-acetyltransferase, rimj/riml family | SAMN05444682_10217 | Not Available | Positive | 892003 - 892548 | 21132.0 |
| hypothetical protein | SAMN05444682_10218 | Not Available | Negative | 892559 - 895276 | 100501.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
