Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| matrixin | SAMN05444682_10167 | Not Available | Negative | 79146 - 80066 | 34668.9 |
| hypothetical protein | SAMN05444682_10168 | Not Available | Negative | 80047 - 80892 | 31144.8 |
| putative transposase | SAMN05444682_10169 | Not Available | Negative | 81345 - 81923 | 21989.1 |
| hypothetical protein | SAMN05444682_10170 | Not Available | Negative | 81883 - 82206 | 12086.4 |
| transposase | SAMN05444682_10171 | Not Available | Negative | 82203 - 82478 | 10534.8 |
| protein of unknown function | SAMN05444682_10172 | Not Available | Negative | 82551 - 83069 | 19850.7 |
| zn-dependent peptidase imma, m78 family | SAMN05444682_10173 | Not Available | Negative | 83072 - 84223 | 43951.1 |
| hypothetical protein | SAMN05444682_10174 | Not Available | Negative | 84224 - 84607 | 14522.1 |
| predicted helicase | SAMN05444682_10175 | Not Available | Negative | 84607 - 89487 | 184835.0 |
| helix-turn-helix | SAMN05444682_10176 | Not Available | Negative | 89484 - 89693 | 8103.96 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
