Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructose-bisphosphate aldolase | SAMN05444682_101475 | Not Available | Positive | 596663 - 597742 | 39398.7 |
| hypothetical protein | SAMN05444682_101476 | Not Available | Positive | 597892 - 598509 | 22974.9 |
| hypothetical protein | SAMN05444682_101477 | Not Available | Positive | 598638 - 599321 | 25508.5 |
| hypothetical protein | SAMN05444682_101478 | Not Available | Positive | 599348 - 600130 | 28845.2 |
| gmp synthase (glutamine-hydrolysing) | SAMN05444682_101479 | Not Available | Positive | 600270 - 601805 | 56333.3 |
| abc-type branched-chain amino acid transport system, substrate-binding protein | SAMN05444682_101480 | Not Available | Positive | 601762 - 603018 | 46832.7 |
| 16s rrna (cytosine967-c5)-methyltransferase | SAMN05444682_101481 | Not Available | Positive | 603034 - 604209 | 44501.3 |
| thioredoxin | SAMN05444682_101482 | Not Available | Negative | 604217 - 604513 | 11072.5 |
| putative membrane protein | SAMN05444682_101483 | Not Available | Positive | 604673 - 604978 | 11598.2 |
| Trna-leu | Not Available | Not Available | Positive | 605228 - 605311 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
