Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa hydrolase/succinyl-coa:acetate coa-transferase | SAMN05444682_101395 | Not Available | Positive | 493965 - 495455 | 54606.4 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN05444682_101396 | Not Available | Positive | 495493 - 496431 | 35654.5 |
| chloride channel protein, cic family | SAMN05444682_101397 | Not Available | Positive | 496473 - 498272 | 66613.5 |
| protein of unknown function | SAMN05444682_101398 | Not Available | Negative | 498366 - 499073 | 25937.9 |
| tonb-dependent receptor plug domain | SAMN05444682_101399 | Not Available | Positive | 499460 - 501886 | 91056.3 |
| protein of unknown function | SAMN05444682_101400 | Not Available | Positive | 501889 - 502665 | 28957.9 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN05444682_101401 | Not Available | Negative | 502680 - 503288 | 23626.4 |
| outer membrane protein | SAMN05444682_101402 | Not Available | Positive | 503327 - 504715 | 51146.1 |
| hlyd family secretion protein | SAMN05444682_101403 | Not Available | Positive | 504745 - 506097 | 48712.0 |
| hypothetical protein | SAMN05444682_101404 | Not Available | Positive | 506260 - 506628 | 13926.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
