Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN05444682_101306 | Not Available | Positive | 381041 - 382768 | 65168.8 |
| protein of unknown function | SAMN05444682_101307 | Not Available | Positive | 382781 - 383233 | 16628.5 |
| protein of unknown function | SAMN05444682_101308 | Not Available | Positive | 383230 - 384219 | 37052.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_101309 | Not Available | Positive | 384232 - 387339 | 114929.0 |
| starch-binding associating with outer membrane | SAMN05444682_101310 | Not Available | Positive | 387360 - 389042 | 63709.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_101311 | Not Available | Positive | 389076 - 392135 | 113538.0 |
| sialate o-acetylesterase | SAMN05444682_101312 | Not Available | Positive | 392184 - 393662 | 54694.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_101313 | Not Available | Positive | 393666 - 394244 | 22681.5 |
| fecr family protein | SAMN05444682_101314 | Not Available | Positive | 394308 - 395474 | 43274.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_101315 | Not Available | Positive | 395617 - 398979 | 124635.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
