Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isopenicillin n synthase | SAMN05444682_107141 | Not Available | Positive | 3718287 - 3719213 | 34331.9 |
| uncharacterized hydrophobic domain-containing protein | SAMN05444682_107142 | Not Available | Positive | 3719267 - 3720580 | 48871.3 |
| dna topoisomerase-3 | SAMN05444682_107143 | Not Available | Negative | 3720568 - 3722382 | 68491.3 |
| thioredoxin | SAMN05444682_107144 | Not Available | Negative | 3722474 - 3723031 | 21156.2 |
| transcriptional regulator, arac family | SAMN05444682_107145 | Not Available | Positive | 3723124 - 3723915 | 30312.7 |
| dihydrofolate reductase | SAMN05444682_107146 | Not Available | Positive | 3723978 - 3724508 | 19599.4 |
| uncharacterized fe-s cluster protein yjdi | SAMN05444682_107147 | Not Available | Positive | 3724720 - 3724926 | 7709.43 |
| hypothetical protein | SAMN05444682_107148 | Not Available | Positive | 3724948 - 3725238 | 10826.1 |
| hypothetical protein | SAMN05444682_107149 | Not Available | Positive | 3725247 - 3725537 | 11241.6 |
| predicted dna-binding protein, mmcq/yjbr family | SAMN05444682_107150 | Not Available | Negative | 3725564 - 3725920 | 13316.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
