Parapedobacter indicus strain RK1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter indicus strain RK1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This strain is part of the genus Parapedobacter, which is known for its ecological significance in various environments. The accession number for strain RK1 is FOQO00000000.1, which serves as a reference for genomic data and further research. The Gram-negative classification of Parapedobacter indicus indicates that it possesses an outer membrane and a distinctive cell wall structure, which may have implications for its interactions with other microorganisms and its ability to survive in different habitats. The rod shape is typical of many bacteria and can influence motility and colonization capabilities. Given its unique traits, Parapedobacter indicus strain RK1 may play a role in specific ecological niches, particularly in soil or aquatic environments where its metabolic processes could contribute to nutrient cycling. The presence of a single replicon suggests a streamlined genomic organization, which may facilitate rapid adaptability to environmental changes. This adaptability could be crucial for survival in competitive microbial communities. Understanding the characteristics of Parapedobacter indicus strain RK1 can provide insights into its ecological role and potential applications in biotechnology or environmental management. Further research could elucidate its specific functions within microbial ecosystems and its interactions with other species.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter indicus
Strainstrain RK1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter indicus strain RK1 genome assembly, contig:

Gene Summary

Adenine Count

1604354 bp

Thymine Count

1596710 bp

Guanine Count

1452045 bp

Cytosine Count

1501904 bp

Genome Length

6155226 bp

Protein-coding Genes

5135 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
geranylgeranyl diphosphate synthase, type iiSAMN05444682_106305Not AvailablePositive3538946 - 353992336270.8
predicted amidohydrolaseSAMN05444682_106306Not AvailablePositive3540028 - 354082530946.1
hypothetical proteinSAMN05444682_106307Not AvailableNegative3540847 - 354126915959.0
rna polymerase sigma-70 factor, ecf subfamilySAMN05444682_106308Not AvailablePositive3541340 - 354183719550.1
hypothetical proteinSAMN05444682_106309Not AvailablePositive3541824 - 354241723415.8
predicted oxidoreductase, contains short-chain dehydrogenase (sdr) and duf2520 domainsSAMN05444682_106310Not AvailableNegative3542405 - 354316927351.0
cytochrome c-type biogenesis protein ccmfSAMN05444682_106311Not AvailableNegative3543175 - 354561391179.2
cytochrome c-type biogenesis protein ccmeSAMN05444682_106312Not AvailableNegative3545617 - 354614119477.4
hypothetical proteinSAMN05444682_106313Not AvailablePositive3546226 - 354718836861.9
ribosome-associated proteinSAMN05444682_106314Not AvailableNegative3547185 - 354760415937.5

Displaying genes 2931 – 2940 of 5188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.