Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| geranylgeranyl diphosphate synthase, type ii | SAMN05444682_106305 | Not Available | Positive | 3538946 - 3539923 | 36270.8 |
| predicted amidohydrolase | SAMN05444682_106306 | Not Available | Positive | 3540028 - 3540825 | 30946.1 |
| hypothetical protein | SAMN05444682_106307 | Not Available | Negative | 3540847 - 3541269 | 15959.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_106308 | Not Available | Positive | 3541340 - 3541837 | 19550.1 |
| hypothetical protein | SAMN05444682_106309 | Not Available | Positive | 3541824 - 3542417 | 23415.8 |
| predicted oxidoreductase, contains short-chain dehydrogenase (sdr) and duf2520 domains | SAMN05444682_106310 | Not Available | Negative | 3542405 - 3543169 | 27351.0 |
| cytochrome c-type biogenesis protein ccmf | SAMN05444682_106311 | Not Available | Negative | 3543175 - 3545613 | 91179.2 |
| cytochrome c-type biogenesis protein ccme | SAMN05444682_106312 | Not Available | Negative | 3545617 - 3546141 | 19477.4 |
| hypothetical protein | SAMN05444682_106313 | Not Available | Positive | 3546226 - 3547188 | 36861.9 |
| ribosome-associated protein | SAMN05444682_106314 | Not Available | Negative | 3547185 - 3547604 | 15937.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
