Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-psicose/d-tagatose/l-ribulose 3-epimerase | SAMN05444682_106295 | Not Available | Negative | 3527898 - 3528770 | 32150.2 |
| arac-type dna-binding protein | SAMN05444682_106296 | Not Available | Positive | 3529019 - 3529903 | 34369.1 |
| iron complex outermembrane recepter protein | SAMN05444682_106297 | Not Available | Negative | 3529904 - 3532306 | 88199.7 |
| acyl-coa dehydrogenase | SAMN05444682_106298 | Not Available | Negative | 3532370 - 3533482 | 40408.4 |
| catechol 2,3-dioxygenase | SAMN05444682_106299 | Not Available | Negative | 3533515 - 3534006 | 18408.7 |
| ecsc protein family protein | SAMN05444682_106300 | Not Available | Negative | 3534045 - 3534794 | 28494.2 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN05444682_106301 | Not Available | Positive | 3534921 - 3535556 | 23505.8 |
| trypsin-like peptidase domain-containing protein | SAMN05444682_106302 | Not Available | Negative | 3535629 - 3536735 | 40724.2 |
| rna polymerase sigma factor, sigma-70 family | SAMN05444682_106303 | Not Available | Negative | 3536742 - 3537290 | 21113.3 |
| predicted arabinose efflux permease, mfs family | SAMN05444682_106304 | Not Available | Negative | 3537498 - 3538715 | 43680.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
