Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-glucose 4,6-dehydratase | SAMN05444682_106244 | Not Available | Negative | 3474768 - 3475820 | 39940.6 |
| hypothetical protein | SAMN05444682_106245 | Not Available | Negative | 3475828 - 3476409 | 22627.7 |
| udp-glucose 4-epimerase | SAMN05444682_106246 | Not Available | Negative | 3476420 - 3477448 | 37425.4 |
| dtdp-glucose 4,6-dehydratase | SAMN05444682_106247 | Not Available | Negative | 3477449 - 3478429 | 37187.5 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05444682_106248 | Not Available | Positive | 3478520 - 3479797 | 47952.0 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05444682_106249 | Not Available | Negative | 3479753 - 3480883 | 42848.5 |
| quinoprotein glucose dehydrogenase | SAMN05444682_106250 | Not Available | Positive | 3480948 - 3483086 | 78810.8 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN05444682_106251 | Not Available | Positive | 3483141 - 3484118 | 35563.4 |
| tryptophan synthase beta chain | SAMN05444682_106252 | Not Available | Positive | 3484156 - 3485523 | 49832.9 |
| photosynthetic reaction center cytochrome c subunit | SAMN05444682_106253 | Not Available | Negative | 3485594 - 3485992 | 14359.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
