Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_106234 | Not Available | Positive | 3458060 - 3461155 | 114950.0 |
| starch-binding associating with outer membrane | SAMN05444682_106235 | Not Available | Positive | 3461176 - 3462786 | 60908.4 |
| alpha-l-fucosidase 2 | SAMN05444682_106236 | Not Available | Positive | 3462871 - 3465195 | 86310.3 |
| hypothetical protein | SAMN05444682_106237 | Not Available | Positive | 3465253 - 3465627 | 13341.6 |
| hypothetical protein | SAMN05444682_106238 | Not Available | Positive | 3465756 - 3466376 | 22688.6 |
| arylsulfatase a | SAMN05444682_106239 | Not Available | Negative | 3466381 - 3467781 | 52049.4 |
| starch-binding associating with outer membrane | SAMN05444682_106240 | Not Available | Negative | 3467794 - 3469293 | 56108.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_106241 | Not Available | Negative | 3469305 - 3472691 | 126063.0 |
| fecr family protein | SAMN05444682_106242 | Not Available | Negative | 3472873 - 3474051 | 43716.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_106243 | Not Available | Positive | 3474145 - 3474750 | 23630.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
