Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase, sigma subunit, ecf family | SAMN05444682_106224 | Not Available | Positive | 3442599 - 3443474 | 33336.1 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN05444682_106225 | Not Available | Positive | 3443514 - 3443963 | 16984.3 |
| transcriptional regulator, arac family | SAMN05444682_106226 | Not Available | Negative | 3443966 - 3444847 | 34674.5 |
| aldose 1-epimerase | SAMN05444682_106227 | Not Available | Positive | 3445085 - 3446083 | 36969.9 |
| mfs transporter, sugar porter (sp) family | SAMN05444682_106228 | Not Available | Positive | 3446097 - 3447440 | 48310.0 |
| tetratricopeptide repeat-containing protein | SAMN05444682_106229 | Not Available | Positive | 3447480 - 3450824 | 126000.0 |
| glycosyl-hydrolase 97 c-terminal, oligomerisation | SAMN05444682_106230 | Not Available | Positive | 3450871 - 3452829 | 73263.4 |
| solute:na+ symporter, sss family | SAMN05444682_106231 | Not Available | Negative | 3452819 - 3454420 | 58194.1 |
| dna-binding transcriptional regulator, gntr family | SAMN05444682_106232 | Not Available | Negative | 3454421 - 3455461 | 39549.9 |
| alpha-galactosidase | SAMN05444682_106233 | Not Available | Negative | 3455513 - 3457711 | 84054.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
