Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN05444682_106204 | Not Available | Negative | 3422378 - 3423031 | 23707.8 |
| 2-dehydro-3-deoxygluconokinase | SAMN05444682_106205 | Not Available | Negative | 3423080 - 3424072 | 36076.8 |
| methionine-gamma-lyase | SAMN05444682_106206 | Not Available | Negative | 3424158 - 3425336 | 42768.1 |
| protein of unknown function | SAMN05444682_106207 | Not Available | Negative | 3425348 - 3425800 | 16343.5 |
| transcriptional regulator, badm/rrf2 family | SAMN05444682_106208 | Not Available | Positive | 3425931 - 3426413 | 18131.2 |
| cytochrome c oxidase cbb3-type subunit 1 | SAMN05444682_106209 | Not Available | Positive | 3426459 - 3428537 | 77862.2 |
| cytochrome c oxidase cbb3-type subunit 2 | SAMN05444682_106210 | Not Available | Positive | 3428548 - 3429552 | 36306.2 |
| hypothetical protein | SAMN05444682_106211 | Not Available | Positive | 3429549 - 3429824 | 10036.6 |
| hypothetical protein | SAMN05444682_106212 | Not Available | Positive | 3429808 - 3430215 | 14968.2 |
| hemoglobin | SAMN05444682_106213 | Not Available | Positive | 3430222 - 3430617 | 15438.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
