Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | SAMN05444682_10684 | Not Available | Negative | 3287363 - 3287719 | 13000.5 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN05444682_10685 | Not Available | Negative | 3287719 - 3288609 | 33790.5 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05444682_10686 | Not Available | Negative | 3288716 - 3289468 | 28151.0 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05444682_10687 | Not Available | Negative | 3289488 - 3290222 | 26084.8 |
| short-chain dehydrogenase | SAMN05444682_10688 | Not Available | Positive | 3290312 - 3291085 | 28633.6 |
| phage shock protein c (pspc) family protein | SAMN05444682_10689 | Not Available | Positive | 3291098 - 3291661 | 21319.0 |
| hypothetical protein | SAMN05444682_10690 | Not Available | Positive | 3291671 - 3292624 | 34982.6 |
| uncharacterized membrane protein yckc, rdd family | SAMN05444682_10691 | Not Available | Positive | 3292624 - 3293238 | 22493.6 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | SAMN05444682_10692 | Not Available | Positive | 3293275 - 3295281 | 74238.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05444682_10693 | Not Available | Negative | 3295317 - 3295829 | 18694.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
