Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd domain-containing protein | SAMN05444682_10674 | Not Available | Negative | 3269638 - 3271263 | 60897.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_10675 | Not Available | Negative | 3271202 - 3274633 | 127452.0 |
| fecr family protein | SAMN05444682_10676 | Not Available | Negative | 3274785 - 3275921 | 42897.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_10677 | Not Available | Negative | 3276021 - 3276812 | 31077.9 |
| mg2 domain-containing protein | SAMN05444682_10678 | Not Available | Positive | 3276990 - 3283058 | 229243.0 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05444682_10679 | Not Available | Positive | 3283064 - 3284038 | 37784.6 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN05444682_10680 | Not Available | Negative | 3284062 - 3284535 | 18239.7 |
| hypothetical protein | SAMN05444682_10681 | Not Available | Positive | 3284542 - 3284655 | 4363.24 |
| topoisomerase-4 subunit b | SAMN05444682_10682 | Not Available | Positive | 3284677 - 3286542 | 70373.9 |
| formyltetrahydrofolate deformylase | SAMN05444682_10683 | Not Available | Positive | 3286552 - 3287394 | 31459.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
