Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05444682_105331 | Not Available | Positive | 3149791 - 3150483 | 26681.4 |
| methionine synthase (b12-independent) | SAMN05444682_105333 | Not Available | Positive | 3150777 - 3153098 | 87158.3 |
| magnesium chelatase family protein | SAMN05444682_105334 | Not Available | Negative | 3153159 - 3154700 | 55943.7 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN05444682_105335 | Not Available | Negative | 3154745 - 3155929 | 43813.4 |
| hypothetical protein | SAMN05444682_105336 | Not Available | Negative | 3155995 - 3156171 | 6822.14 |
| gas vesicle protein | SAMN05444682_105337 | Not Available | Positive | 3156199 - 3156468 | 9544.23 |
| putative holin-x, holin superfamily iii | SAMN05444682_105338 | Not Available | Positive | 3156610 - 3156996 | 14800.2 |
| hypothetical protein | SAMN05444682_105339 | Not Available | Positive | 3156974 - 3157444 | 17933.9 |
| gdp-l-fucose synthase | SAMN05444682_105340 | Not Available | Negative | 3157453 - 3158460 | 37725.4 |
| trna (guanine-n7-)-methyltransferase | SAMN05444682_105341 | Not Available | Positive | 3158489 - 3159139 | 25008.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
