Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-glucuronate isomerase | SAMN05444682_105311 | Not Available | Negative | 3128402 - 3129805 | 53611.2 |
| mannonate dehydratase | SAMN05444682_105312 | Not Available | Negative | 3129827 - 3130990 | 43625.0 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444682_105313 | Not Available | Negative | 3131110 - 3131931 | 28526.0 |
| dna-binding protein hu-beta | SAMN05444682_105314 | Not Available | Positive | 3132183 - 3132467 | 10301.7 |
| tetratricopeptide repeat-containing protein | SAMN05444682_105315 | Not Available | Positive | 3132504 - 3133340 | 30419.9 |
| ribonuclease g | SAMN05444682_105316 | Not Available | Positive | 3133664 - 3135217 | 58801.6 |
| trna dimethylallyltransferase | SAMN05444682_105317 | Not Available | Negative | 3135239 - 3136135 | 34087.6 |
| hypothetical protein | SAMN05444682_105318 | Not Available | Negative | 3136132 - 3136974 | 32036.4 |
| cubico group peptidase, beta-lactamase class c family | SAMN05444682_105319 | Not Available | Positive | 3137252 - 3139012 | 65261.5 |
| dna repair protein rada/sms | SAMN05444682_105320 | Not Available | Positive | 3139021 - 3140400 | 50464.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
