Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | SAMN05444682_105301 | Not Available | Positive | 3118583 - 3119470 | 33282.6 |
| transporter, sss family | SAMN05444682_105302 | Not Available | Negative | 3119477 - 3121192 | 63113.5 |
| hypothetical protein | SAMN05444682_105303 | Not Available | Negative | 3121298 - 3121498 | 7102.63 |
| n-acetylglucosaminyl deacetylase, lmbe family | SAMN05444682_105304 | Not Available | Negative | 3121516 - 3123951 | 90269.9 |
| hypothetical protein | SAMN05444682_105305 | Not Available | Negative | 3124271 - 3124531 | 9748.85 |
| thioredoxin | SAMN05444682_105306 | Not Available | Negative | 3124512 - 3124826 | 11872.2 |
| peroxiredoxin (alkyl hydroperoxide reductase subunit c) | SAMN05444682_105307 | Not Available | Negative | 3124896 - 3125540 | 24069.2 |
| Trna-arg | Not Available | Not Available | Positive | 3125905 - 3125979 | Not Available |
| hypothetical protein | SAMN05444682_105309 | Not Available | Positive | 3126032 - 3126682 | 23279.2 |
| beta-xylosidase | SAMN05444682_105310 | Not Available | Positive | 3126797 - 3128380 | 58100.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
