Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-undet | Not Available | Not Available | Positive | 3099976 - 3100049 | Not Available |
| putative endonuclease | SAMN05444682_105282 | Not Available | Negative | 3100043 - 3100288 | 9725.62 |
| Trna-val | Not Available | Not Available | Positive | 3100329 - 3100406 | Not Available |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN05444682_105284 | Not Available | Positive | 3100574 - 3101926 | 50291.8 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN05444682_105285 | Not Available | Positive | 3101929 - 3103248 | 50227.1 |
| protein-tyrosine phosphatase | SAMN05444682_105286 | Not Available | Positive | 3103259 - 3103693 | 16544.9 |
| hypothetical protein | SAMN05444682_105287 | Not Available | Positive | 3104121 - 3104477 | 13990.2 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN05444682_105288 | Not Available | Positive | 3104484 - 3105233 | 28351.0 |
| hypothetical protein | SAMN05444682_105289 | Not Available | Negative | 3105230 - 3107011 | 68147.7 |
| von willebrand factor type a domain-containing protein | SAMN05444682_105290 | Not Available | Positive | 3107282 - 3108379 | 41814.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
