Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05444682_105212 | Not Available | Positive | 3028242 - 3030323 | 75348.0 |
| translation elongation factor p (ef-p) | SAMN05444682_105213 | Not Available | Negative | 3030470 - 3031030 | 21136.0 |
| abc transporter | SAMN05444682_105214 | Not Available | Negative | 3031090 - 3031710 | 23682.5 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN05444682_105215 | Not Available | Negative | 3031714 - 3032508 | 28921.9 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | SAMN05444682_105216 | Not Available | Negative | 3032505 - 3033914 | 52285.8 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | SAMN05444682_105217 | Not Available | Negative | 3033960 - 3035000 | 37588.1 |
| hypothetical protein | SAMN05444682_105218 | Not Available | Negative | 3035055 - 3036293 | 47270.4 |
| response regulator receiver domain-containing protein | SAMN05444682_105219 | Not Available | Positive | 3036479 - 3038032 | 60440.4 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN05444682_105220 | Not Available | Positive | 3038056 - 3038469 | 15322.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_105221 | Not Available | Positive | 3038539 - 3039096 | 21257.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
