Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| muts domain v | SAMN05444682_105192 | Not Available | Negative | 3001033 - 3002358 | 50284.6 |
| glpgli family protein | SAMN05444682_105193 | Not Available | Positive | 3002555 - 3003442 | 32896.8 |
| hypothetical protein | SAMN05444682_105194 | Not Available | Positive | 3003451 - 3006129 | 100648.0 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05444682_105195 | Not Available | Positive | 3006111 - 3006836 | 27384.1 |
| signal transduction histidine kinase | SAMN05444682_105196 | Not Available | Positive | 3006847 - 3008202 | 50867.4 |
| sec-independent protein translocase protein tata | SAMN05444682_105197 | Not Available | Positive | 3008265 - 3008489 | 8117.04 |
| outer membrane protein, cobalt-zinc-cadmium efflux system | SAMN05444682_105198 | Not Available | Positive | 3008486 - 3009784 | 48649.3 |
| membrane fusion protein, cobalt-zinc-cadmium efflux system | SAMN05444682_105199 | Not Available | Positive | 3009793 - 3010869 | 39746.7 |
| cobalt-zinc-cadmium resistance protein czca | SAMN05444682_105200 | Not Available | Positive | 3010873 - 3013968 | 114063.0 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | SAMN05444682_105201 | Not Available | Positive | 3014011 - 3015249 | 43978.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
