Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phoh-like atpase | SAMN05444682_105182 | Not Available | Positive | 2987127 - 2988455 | 49759.0 |
| 16s rrna c967 or c1407 c5-methylase, rsmb/rsmf family | SAMN05444682_105183 | Not Available | Negative | 2988503 - 2989873 | 50696.7 |
| hypothetical protein | SAMN05444682_105184 | Not Available | Positive | 2989972 - 2990376 | 15817.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_105185 | Not Available | Positive | 2990524 - 2991105 | 22516.3 |
| fecr family protein | SAMN05444682_105186 | Not Available | Positive | 2991181 - 2992422 | 46020.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_105187 | Not Available | Positive | 2992554 - 2995940 | 126411.0 |
| starch-binding associating with outer membrane | SAMN05444682_105188 | Not Available | Positive | 2995952 - 2997748 | 68511.2 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN05444682_105189 | Not Available | Positive | 2997830 - 2999002 | 44171.3 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN05444682_105190 | Not Available | Positive | 2999030 - 2999911 | 33249.4 |
| hypothetical protein | SAMN05444682_105191 | Not Available | Positive | 2999942 - 3001021 | 39781.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
