Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN05444682_105172 | Not Available | Positive | 2970486 - 2971472 | 36383.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_105173 | Not Available | Positive | 2971541 - 2974675 | 114007.0 |
| starch-binding associating with outer membrane | SAMN05444682_105174 | Not Available | Positive | 2974684 - 2976207 | 56907.7 |
| l-alanine-dl-glutamate epimerase | SAMN05444682_105175 | Not Available | Positive | 2976217 - 2977314 | 40620.3 |
| glucose/galactose transporter | SAMN05444682_105176 | Not Available | Positive | 2977353 - 2978675 | 47399.6 |
| excinuclease abc subunit a | SAMN05444682_105177 | Not Available | Positive | 2978926 - 2981781 | 106348.0 |
| dna mismatch repair protein mutl | SAMN05444682_105178 | Not Available | Positive | 2981793 - 2983616 | 68092.4 |
| rhomboid-like protein | SAMN05444682_105179 | Not Available | Positive | 2983632 - 2984366 | 27204.0 |
| membrane associated serine protease, rhomboid family | SAMN05444682_105180 | Not Available | Positive | 2984431 - 2985318 | 32968.9 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN05444682_105181 | Not Available | Positive | 2985318 - 2986442 | 42864.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
