Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| galactosamine 6-phosphate isomerase agas | SAMN05444682_105162 | Not Available | Negative | 2956794 - 2958029 | 45963.9 |
| d-alanine-d-alanine ligase | SAMN05444682_105163 | Not Available | Positive | 2958205 - 2959215 | 37467.2 |
| predicted metal-dependent hydrolase, tim-barrel fold | SAMN05444682_105164 | Not Available | Positive | 2959252 - 2960370 | 41930.2 |
| transcriptional regulator, deor family | SAMN05444682_105165 | Not Available | Positive | 2960483 - 2961262 | 28306.2 |
| hypothetical protein | SAMN05444682_105166 | Not Available | Positive | 2961476 - 2962471 | 37061.5 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN05444682_105167 | Not Available | Positive | 2962485 - 2963795 | 47519.2 |
| protein of unknown function | SAMN05444682_105168 | Not Available | Positive | 2963792 - 2965072 | 46597.4 |
| hippurate hydrolase | SAMN05444682_105169 | Not Available | Positive | 2965078 - 2966400 | 47640.4 |
| predicted dehydrogenase | SAMN05444682_105170 | Not Available | Positive | 2966616 - 2967971 | 50381.1 |
| glycosyl hydrolase family 20, catalytic domain | SAMN05444682_105171 | Not Available | Positive | 2968216 - 2970489 | 88362.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
