Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline dehydrogenase | SAMN05444682_101227 | Not Available | Positive | 284278 - 286014 | 63824.7 |
| gluconate 2-dehydrogenase subunit 3 | SAMN05444682_101228 | Not Available | Positive | 286044 - 286676 | 22573.9 |
| cold-shock dna-binding protein family | SAMN05444682_101229 | Not Available | Negative | 287297 - 287758 | 17071.0 |
| hypothetical protein | SAMN05444682_101230 | Not Available | Positive | 287811 - 287954 | 5381.74 |
| short-chain dehydrogenase | SAMN05444682_101231 | Not Available | Positive | 287956 - 288678 | 26680.3 |
| osta-like protein | SAMN05444682_101232 | Not Available | Negative | 288608 - 290950 | 87562.5 |
| trna(ile)-lysidine synthase | SAMN05444682_101233 | Not Available | Positive | 290981 - 292351 | 52399.4 |
| hypothetical protein | SAMN05444682_101234 | Not Available | Positive | 292355 - 292858 | 19299.8 |
| protein of unknown function | SAMN05444682_101235 | Not Available | Positive | 292953 - 293237 | 10874.4 |
| dna replication and repair protein recf | SAMN05444682_101236 | Not Available | Positive | 293264 - 294364 | 42250.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
