Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanylate kinase | SAMN05444682_105102 | Not Available | Positive | 2900040 - 2900612 | 21601.8 |
| nicotinate-nucleotide adenylyltransferase | SAMN05444682_105103 | Not Available | Positive | 2900625 - 2901203 | 22355.0 |
| 2-deoxy-d-gluconate 3-dehydrogenase | SAMN05444682_105104 | Not Available | Negative | 2901204 - 2901974 | 27439.5 |
| protein of unknown function | SAMN05444682_105105 | Not Available | Negative | 2901984 - 2903117 | 41673.8 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | SAMN05444682_105106 | Not Available | Negative | 2903117 - 2903959 | 31564.6 |
| hypothetical protein | SAMN05444682_105107 | Not Available | Positive | 2904022 - 2904279 | 9956.39 |
| tetratricopeptide repeat-containing protein | SAMN05444682_105108 | Not Available | Positive | 2904372 - 2905775 | 54286.5 |
| phosphosulfolactate synthase | SAMN05444682_105109 | Not Available | Positive | 2905875 - 2906630 | 28498.2 |
| shikimate dehydrogenase | SAMN05444682_105110 | Not Available | Positive | 2906633 - 2907382 | 27703.5 |
| gliding motility-associated lipoprotein gldd | SAMN05444682_105111 | Not Available | Positive | 2907379 - 2907966 | 22568.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
