Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN05444682_10542 | Not Available | Positive | 2809180 - 2810691 | 56922.0 |
| glucosylceramidase | SAMN05444682_10543 | Not Available | Positive | 2810709 - 2812205 | 56110.6 |
| protein of unknown function | SAMN05444682_10544 | Not Available | Positive | 2812218 - 2813555 | 48806.1 |
| excinuclease abc subunit a | SAMN05444682_10545 | Not Available | Positive | 2813689 - 2816496 | 103680.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_10546 | Not Available | Positive | 2816577 - 2817164 | 22530.4 |
| fecr family protein | SAMN05444682_10547 | Not Available | Positive | 2817273 - 2818469 | 44687.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_10548 | Not Available | Positive | 2818592 - 2821852 | 119186.0 |
| starch-binding associating with outer membrane | SAMN05444682_10549 | Not Available | Positive | 2821862 - 2823547 | 63383.8 |
| alpha-1,2-mannosidase, putative | SAMN05444682_10550 | Not Available | Positive | 2823667 - 2827365 | 138550.0 |
| uncharacterized sulfatase | SAMN05444682_10551 | Not Available | Positive | 2827376 - 2828725 | 50443.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
