Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-carbamoylputrescine amidase | SAMN05444682_101217 | Not Available | Negative | 270600 - 271469 | 32580.5 |
| hypothetical protein | SAMN05444682_101218 | Not Available | Negative | 271640 - 272506 | 30863.1 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN05444682_101219 | Not Available | Negative | 272585 - 274057 | 56455.0 |
| thioredoxin | SAMN05444682_101220 | Not Available | Negative | 274165 - 274482 | 11657.2 |
| dna polymerase iii, alpha subunit | SAMN05444682_101221 | Not Available | Negative | 274661 - 279094 | 166632.0 |
| ammonium transporter | SAMN05444682_101222 | Not Available | Positive | 279490 - 280800 | 46112.0 |
| l-alanine-dl-glutamate epimerase | SAMN05444682_101223 | Not Available | Positive | 280866 - 281963 | 39878.6 |
| homospermidine synthase (spermidine-specific) | SAMN05444682_101224 | Not Available | Positive | 282035 - 283015 | 36836.6 |
| hypothetical protein | SAMN05444682_101225 | Not Available | Positive | 283024 - 283521 | 18187.7 |
| xtp/ditp diphosphohydrolase | SAMN05444682_101226 | Not Available | Positive | 283518 - 284096 | 21449.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
