Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative endonuclease | SAMN05444682_1052 | Not Available | Positive | 2756212 - 2756577 | 14145.8 |
| glutamine cyclotransferase | SAMN05444682_1053 | Not Available | Positive | 2756659 - 2757705 | 39350.7 |
| potassium uptake protein, trkh family | SAMN05444682_1054 | Not Available | Positive | 2757705 - 2759483 | 65759.3 |
| trk system potassium uptake protein trka | SAMN05444682_1055 | Not Available | Positive | 2759498 - 2760184 | 25187.7 |
| numod1 domain-containing protein | SAMN05444682_1056 | Not Available | Negative | 2760189 - 2761478 | 49126.8 |
| lipoprotein-anchoring transpeptidase erfk/srfk | SAMN05444682_1057 | Not Available | Positive | 2761648 - 2762676 | 39260.8 |
| l,d-transpeptidase catalytic domain | SAMN05444682_1058 | Not Available | Positive | 2762691 - 2763494 | 29554.7 |
| membrane protein yfho | SAMN05444682_1059 | Not Available | Positive | 2763596 - 2766067 | 92865.2 |
| rnase hii | SAMN05444682_10510 | Not Available | Negative | 2766064 - 2766660 | 22078.5 |
| hypothetical protein | SAMN05444682_10511 | Not Available | Positive | 2766867 - 2767688 | 30619.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
