Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | SAMN05444682_104344 | Not Available | Positive | 2689148 - 2689651 | 18782.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN05444682_104345 | Not Available | Positive | 2689713 - 2690654 | 34890.1 |
| abc-2 type transport system atp-binding protein | SAMN05444682_104346 | Not Available | Positive | 2690661 - 2691386 | 26651.3 |
| hypothetical protein | SAMN05444682_104347 | Not Available | Positive | 2691468 - 2692043 | 19687.2 |
| protein involved in gliding motility gldg | SAMN05444682_104348 | Not Available | Positive | 2692390 - 2694795 | 88782.4 |
| hypothetical protein | SAMN05444682_104349 | Not Available | Positive | 2695003 - 2695254 | 9242.3 |
| Trna-leu | Not Available | Not Available | Positive | 2695497 - 2695582 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2695640 - 2695715 | Not Available |
| regulatory protein | SAMN05444682_104352 | Not Available | Negative | 2695780 - 2696226 | 17111.6 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN05444682_104353 | Not Available | Positive | 2696292 - 2698754 | 90764.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
