Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prolyl-trna synthetase | SAMN05444682_104324 | Not Available | Negative | 2672136 - 2673608 | 55437.2 |
| hypothetical protein | SAMN05444682_104325 | Not Available | Positive | 2673793 - 2674932 | 41256.1 |
| hypothetical protein | SAMN05444682_104326 | Not Available | Positive | 2675012 - 2676556 | 56696.6 |
| starvation-inducible dna-binding protein | SAMN05444682_104327 | Not Available | Negative | 2676648 - 2677127 | 18500.2 |
| membrane-bound serine protease (clpp class) | SAMN05444682_104328 | Not Available | Negative | 2677187 - 2678521 | 48162.1 |
| protein of unknown function | SAMN05444682_104329 | Not Available | Positive | 2678580 - 2679335 | 28495.1 |
| lysm repeat-containing protein | SAMN05444682_104330 | Not Available | Positive | 2679355 - 2680248 | 32259.0 |
| uridine kinase | SAMN05444682_104331 | Not Available | Positive | 2680235 - 2680891 | 25442.4 |
| 3-oxoacid coa-transferase subunit b | SAMN05444682_104332 | Not Available | Negative | 2680880 - 2681545 | 23681.8 |
| 3-oxoacid coa-transferase subunit a | SAMN05444682_104333 | Not Available | Negative | 2681535 - 2682272 | 26595.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
