Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444682_104274 | Not Available | Negative | 2623390 - 2623782 | 14635.8 |
| lysophospholipase, alpha-beta hydrolase superfamily | SAMN05444682_104275 | Not Available | Positive | 2623971 - 2624894 | 34673.6 |
| trna pseudouridine synthase c | SAMN05444682_104276 | Not Available | Positive | 2624948 - 2625643 | 26162.0 |
| homoserine o-succinyltransferase | SAMN05444682_104277 | Not Available | Negative | 2625740 - 2626684 | 36462.7 |
| hypothetical protein | SAMN05444682_104278 | Not Available | Negative | 2626763 - 2626996 | 8867.3 |
| exonuclease sbcc | SAMN05444682_104279 | Not Available | Negative | 2627031 - 2630759 | 140631.0 |
| exodeoxyribonuclease i subunit d | SAMN05444682_104280 | Not Available | Negative | 2630756 - 2632009 | 46860.4 |
| hypothetical protein | SAMN05444682_104281 | Not Available | Positive | 2632313 - 2632777 | 17659.1 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05444682_104282 | Not Available | Negative | 2632853 - 2633344 | 18240.5 |
| regulatory protein, arsr family | SAMN05444682_104283 | Not Available | Negative | 2633346 - 2633705 | 14088.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
