Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted p-loop atpase, kap-like | SAMN05444682_104204 | Not Available | Negative | 2553220 - 2555376 | 82494.0 |
| superfamily i dna or rna helicase | SAMN05444682_104205 | Not Available | Negative | 2555379 - 2557232 | 70918.9 |
| predicted atp-dependent endonuclease of the old family, contains p-loop atpase and toprim domains | SAMN05444682_104206 | Not Available | Negative | 2557237 - 2559228 | 76560.4 |
| aaa atpase domain-containing protein | SAMN05444682_104207 | Not Available | Negative | 2559240 - 2561408 | 82248.5 |
| exonuclease sbcc | SAMN05444682_104208 | Not Available | Negative | 2561437 - 2565171 | 139708.0 |
| exodeoxyribonuclease i subunit d | SAMN05444682_104209 | Not Available | Negative | 2565168 - 2566421 | 46538.6 |
| hypothetical protein | SAMN05444682_104210 | Not Available | Negative | 2566528 - 2566773 | 9078.22 |
| hypothetical protein | SAMN05444682_104211 | Not Available | Positive | 2566960 - 2567256 | 11314.9 |
| hypothetical protein | SAMN05444682_104212 | Not Available | Positive | 2567588 - 2568130 | 21128.3 |
| hypothetical protein | SAMN05444682_104213 | Not Available | Negative | 2568181 - 2568393 | 7724.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
