Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444682_104194 | Not Available | Positive | 2540891 - 2542021 | 43860.5 |
| hypothetical protein | SAMN05444682_104195 | Not Available | Positive | 2542243 - 2542731 | 18852.7 |
| methylamine utilisation protein maue | SAMN05444682_104196 | Not Available | Positive | 2542728 - 2543267 | 20285.0 |
| hypothetical protein | SAMN05444682_104197 | Not Available | Positive | 2543248 - 2543556 | 11250.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_104198 | Not Available | Negative | 2543630 - 2548231 | 171218.0 |
| thiol-disulfide isomerase or thioredoxin | SAMN05444682_104199 | Not Available | Negative | 2548243 - 2550510 | 86003.9 |
| helix-turn-helix domain-containing protein | SAMN05444682_104200 | Not Available | Positive | 2550750 - 2551130 | 14337.2 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN05444682_104201 | Not Available | Positive | 2551142 - 2551552 | 15445.5 |
| fic family protein | SAMN05444682_104202 | Not Available | Positive | 2551562 - 2552887 | 51300.2 |
| hypothetical protein | SAMN05444682_104203 | Not Available | Positive | 2552919 - 2553110 | 7362.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
