Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase dead | SAMN05444682_101186 | Not Available | Negative | 234826 - 236613 | 67009.6 |
| ompa-ompf porin, oop family | SAMN05444682_101187 | Not Available | Negative | 236810 - 238132 | 47872.4 |
| alanyl-trna synthetase | SAMN05444682_101188 | Not Available | Positive | 238547 - 241252 | 101098.0 |
| peroxiredoxin | SAMN05444682_101189 | Not Available | Positive | 241253 - 242350 | 41179.9 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN05444682_101190 | Not Available | Positive | 242450 - 243136 | 25899.7 |
| histidine ammonia-lyase | SAMN05444682_101191 | Not Available | Negative | 243133 - 244695 | 56466.4 |
| trna1val (adenine37-n6)-methyltransferase | SAMN05444682_101192 | Not Available | Positive | 244819 - 245529 | 25998.6 |
| hypothetical protein | SAMN05444682_101193 | Not Available | Positive | 245552 - 246046 | 18930.8 |
| d-fructose 1,6-bisphosphatase | SAMN05444682_101194 | Not Available | Positive | 246153 - 247172 | 37595.1 |
| dna-binding transcriptional regulator, merr family | SAMN05444682_101195 | Not Available | Negative | 247146 - 247481 | 13123.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
