Parapedobacter indicus strain RK1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter indicus strain RK1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This strain is part of the genus Parapedobacter, which is known for its ecological significance in various environments. The accession number for strain RK1 is FOQO00000000.1, which serves as a reference for genomic data and further research. The Gram-negative classification of Parapedobacter indicus indicates that it possesses an outer membrane and a distinctive cell wall structure, which may have implications for its interactions with other microorganisms and its ability to survive in different habitats. The rod shape is typical of many bacteria and can influence motility and colonization capabilities. Given its unique traits, Parapedobacter indicus strain RK1 may play a role in specific ecological niches, particularly in soil or aquatic environments where its metabolic processes could contribute to nutrient cycling. The presence of a single replicon suggests a streamlined genomic organization, which may facilitate rapid adaptability to environmental changes. This adaptability could be crucial for survival in competitive microbial communities. Understanding the characteristics of Parapedobacter indicus strain RK1 can provide insights into its ecological role and potential applications in biotechnology or environmental management. Further research could elucidate its specific functions within microbial ecosystems and its interactions with other species.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter indicus
Strainstrain RK1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter indicus strain RK1 genome assembly, contig:

Gene Summary

Adenine Count

1604354 bp

Thymine Count

1596710 bp

Guanine Count

1452045 bp

Cytosine Count

1501904 bp

Genome Length

6155226 bp

Protein-coding Genes

5135 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hsp20 family proteinSAMN05444682_10484Not AvailableNegative2426639 - 242707616306.0
dihydroneopterin aldolaseSAMN05444682_10485Not AvailableNegative2427229 - 242760914630.4
regulatory protein, luxr familySAMN05444682_10486Not AvailableNegative2427666 - 242836727070.4
regulatory protein, luxr familySAMN05444682_10487Not AvailableNegative2428478 - 242918226946.4
hypothetical proteinSAMN05444682_10488Not AvailablePositive2429532 - 243014323752.7
protein of unknown functionSAMN05444682_10489Not AvailablePositive2430324 - 243106727267.2
asparagine synthase (glutamine-hydrolysing)SAMN05444682_10490Not AvailableNegative2431162 - 243284763528.4
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferaseSAMN05444682_10491Not AvailablePositive2433220 - 243379221885.5
imp cyclohydrolase /phosphoribosylaminoimidazolecarboxamide formyltransferaseSAMN05444682_10492Not AvailablePositive2433848 - 243537456053.7
uncharacterized conserved protein yece, duf72 familySAMN05444682_10493Not AvailablePositive2435470 - 243634833504.0

Displaying genes 1951 – 1960 of 5188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.