Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase (family 10) | SAMN05444682_10434 | Not Available | Positive | 2363461 - 2365140 | 62821.2 |
| peptidase family m1 | SAMN05444682_10435 | Not Available | Positive | 2365144 - 2366799 | 63812.9 |
| protein of unknown function | SAMN05444682_10436 | Not Available | Negative | 2366806 - 2368710 | 71775.2 |
| transglutaminase-like superfamily protein | SAMN05444682_10437 | Not Available | Negative | 2368707 - 2370695 | 75455.2 |
| rod shape-determining protein mreb | SAMN05444682_10438 | Not Available | Positive | 2370786 - 2371808 | 37015.2 |
| rod shape-determining protein mrec | SAMN05444682_10439 | Not Available | Positive | 2371890 - 2372723 | 30553.4 |
| hypothetical protein | SAMN05444682_10440 | Not Available | Positive | 2372716 - 2373231 | 20040.2 |
| penicillin-binding protein 2 | SAMN05444682_10441 | Not Available | Positive | 2373260 - 2375212 | 72408.3 |
| rod shape determining protein roda | SAMN05444682_10442 | Not Available | Positive | 2375205 - 2376476 | 47456.2 |
| hypothetical protein | SAMN05444682_10443 | Not Available | Negative | 2376612 - 2376944 | 12605.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
