Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, fhs family, l-fucose permease | SAMN05444682_103460 | Not Available | Positive | 2289925 - 2291289 | 49778.9 |
| putative membrane-bound dehydrogenase domain-containing protein | SAMN05444682_103461 | Not Available | Negative | 2291367 - 2294831 | 125909.0 |
| lysophospholipase l1 | SAMN05444682_103462 | Not Available | Negative | 2294885 - 2296111 | 45011.7 |
| repeat domain-containing protein | SAMN05444682_103463 | Not Available | Negative | 2296153 - 2297328 | 43739.9 |
| starch-binding associating with outer membrane | SAMN05444682_103464 | Not Available | Negative | 2297367 - 2298860 | 55729.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103465 | Not Available | Negative | 2298895 - 2302254 | 122507.0 |
| fecr family protein | SAMN05444682_103466 | Not Available | Negative | 2302477 - 2303757 | 47457.7 |
| rna polymerase, sigma subunit, ecf family | SAMN05444682_103467 | Not Available | Negative | 2303794 - 2304381 | 22796.8 |
| hypothetical protein | SAMN05444682_103468 | Not Available | Negative | 2304648 - 2305844 | 45637.0 |
| hypothetical protein | SAMN05444682_103469 | Not Available | Positive | 2306059 - 2306343 | 10786.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
