Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444682_103450 | Not Available | Positive | 2275715 - 2275900 | 6622.46 |
| predicted dehydrogenase | SAMN05444682_103451 | Not Available | Negative | 2275901 - 2276962 | 38773.2 |
| predicted acyltransferase | SAMN05444682_103452 | Not Available | Positive | 2277230 - 2278339 | 41356.7 |
| putative hydrolase of the had superfamily | SAMN05444682_103453 | Not Available | Negative | 2278490 - 2279149 | 24619.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_103454 | Not Available | Positive | 2279375 - 2279941 | 22077.8 |
| fecr family protein | SAMN05444682_103455 | Not Available | Positive | 2279997 - 2280965 | 36356.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103456 | Not Available | Positive | 2281113 - 2284571 | 127207.0 |
| starch-binding associating with outer membrane | SAMN05444682_103457 | Not Available | Positive | 2284612 - 2286420 | 68192.8 |
| calcineurin-like phosphoesterase | SAMN05444682_103458 | Not Available | Positive | 2286434 - 2287399 | 36548.0 |
| pas domain s-box-containing protein | SAMN05444682_103459 | Not Available | Negative | 2287496 - 2289847 | 88022.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
