Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, sp family, arabinose:h+ symporter/mfs transporter, sp family, xylose:h+ symportor | SAMN05444682_103440 | Not Available | Positive | 2261105 - 2262466 | 49715.4 |
| l-fucose isomerase | SAMN05444682_103441 | Not Available | Positive | 2262488 - 2263864 | 50179.5 |
| sugar or nucleoside kinase, ribokinase family | SAMN05444682_103442 | Not Available | Positive | 2263877 - 2264968 | 40268.4 |
| 4-aminobutyrate aminotransferase/4-aminobutyrate aminotransferase / (s)-3-amino-2-methylpropionate transaminase | SAMN05444682_103443 | Not Available | Positive | 2264976 - 2266364 | 51245.6 |
| hypothetical protein | SAMN05444682_103444 | Not Available | Positive | 2266375 - 2267802 | 53344.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103445 | Not Available | Positive | 2267830 - 2270976 | 113694.0 |
| starch-binding associating with outer membrane | SAMN05444682_103446 | Not Available | Positive | 2270994 - 2272421 | 53277.8 |
| glycosyl hydrolases family 28 | SAMN05444682_103447 | Not Available | Positive | 2272408 - 2273679 | 46582.1 |
| acetyl xylan esterase (axe1) | SAMN05444682_103448 | Not Available | Positive | 2273901 - 2275298 | 51953.1 |
| mtn3 and saliva related transmembrane protein | SAMN05444682_103449 | Not Available | Positive | 2275351 - 2275623 | 10044.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
