Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein | SAMN05444682_103410 | Not Available | Negative | 2205134 - 2205355 | 8147.47 |
| hypothetical protein | SAMN05444682_103411 | Not Available | Positive | 2205628 - 2206287 | 24850.6 |
| two-component system, ompr family, phosphate regulon response regulator phob/two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN05444682_103412 | Not Available | Negative | 2206297 - 2206656 | 13223.9 |
| pas domain s-box-containing protein | SAMN05444682_103413 | Not Available | Negative | 2206663 - 2208729 | 77908.2 |
| hypothetical protein | SAMN05444682_103414 | Not Available | Negative | 2209070 - 2209276 | 7370.71 |
| two-component system, ompr family, response regulator rpaa | SAMN05444682_103415 | Not Available | Negative | 2209456 - 2209824 | 13619.5 |
| hypothetical protein | SAMN05444682_103416 | Not Available | Negative | 2209908 - 2210639 | 27235.2 |
| duf1680 family protein | SAMN05444682_103417 | Not Available | Negative | 2210703 - 2212721 | 77244.8 |
| alpha-l-rhamnosidase | SAMN05444682_103418 | Not Available | Negative | 2212725 - 2216045 | 122781.0 |
| hypothetical protein | SAMN05444682_103419 | Not Available | Negative | 2216084 - 2218174 | 78902.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
