Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | Positive | 204243 - 204320 | 18.01 |
| glycosyl hydrolases family 28 | SAMN05444682_101167 | Not Available | Negative | 204475 - 205926 | 53595.9 |
| protein of unknown function (du1801) | SAMN05444682_101168 | Not Available | Positive | 206163 - 206552 | 15124.2 |
| atpase components of abc transporters with duplicated atpase domains | SAMN05444682_101169 | Not Available | Negative | 206560 - 208188 | 61009.6 |
| transcriptional regulator, laci family | SAMN05444682_101170 | Not Available | Negative | 208246 - 209253 | 37873.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444682_101171 | Not Available | Positive | 209433 - 210032 | 23380.6 |
| fecr family protein | SAMN05444682_101172 | Not Available | Positive | 210135 - 211292 | 42899.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_101173 | Not Available | Positive | 211426 - 214833 | 124427.0 |
| starch-binding associating with outer membrane | SAMN05444682_101174 | Not Available | Positive | 214861 - 216336 | 56095.7 |
| alpha-l-rhamnosidase | SAMN05444682_101175 | Not Available | Positive | 216546 - 219281 | 102971.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
