Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 39 | SAMN05444682_103380 | Not Available | Negative | 2168267 - 2169709 | 53826.9 |
| glycosyl hydrolases family 39 | SAMN05444682_103381 | Not Available | Negative | 2169723 - 2171102 | 52929.1 |
| starch-binding associating with outer membrane | SAMN05444682_103382 | Not Available | Negative | 2171134 - 2172756 | 61672.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103383 | Not Available | Negative | 2172769 - 2175753 | 109126.0 |
| transcriptional regulator, iclr family | SAMN05444682_103384 | Not Available | Positive | 2176014 - 2176754 | 27602.8 |
| y_y_y domain-containing protein | SAMN05444682_103385 | Not Available | Negative | 2176776 - 2179661 | 109838.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN05444682_103386 | Not Available | Negative | 2179954 - 2182377 | 90289.7 |
| phage shock protein c (pspc) family protein | SAMN05444682_103387 | Not Available | Negative | 2182574 - 2184229 | 62295.3 |
| transcriptional regulator, padr family | SAMN05444682_103388 | Not Available | Negative | 2184243 - 2184638 | 14734.5 |
| gliding motility-associated lipoprotein gldh | SAMN05444682_103389 | Not Available | Negative | 2184779 - 2185252 | 17918.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
