Parapedobacter indicus strain RK1

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter indicus strain RK1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon structure. This strain is part of the genus Parapedobacter, which is known for its ecological significance in various environments. The accession number for strain RK1 is FOQO00000000.1, which serves as a reference for genomic data and further research. The Gram-negative classification of Parapedobacter indicus indicates that it possesses an outer membrane and a distinctive cell wall structure, which may have implications for its interactions with other microorganisms and its ability to survive in different habitats. The rod shape is typical of many bacteria and can influence motility and colonization capabilities. Given its unique traits, Parapedobacter indicus strain RK1 may play a role in specific ecological niches, particularly in soil or aquatic environments where its metabolic processes could contribute to nutrient cycling. The presence of a single replicon suggests a streamlined genomic organization, which may facilitate rapid adaptability to environmental changes. This adaptability could be crucial for survival in competitive microbial communities. Understanding the characteristics of Parapedobacter indicus strain RK1 can provide insights into its ecological role and potential applications in biotechnology or environmental management. Further research could elucidate its specific functions within microbial ecosystems and its interactions with other species.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter indicus
Strainstrain RK1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter indicus strain RK1 genome assembly, contig:

Gene Summary

Adenine Count

1604354 bp

Thymine Count

1596710 bp

Guanine Count

1452045 bp

Cytosine Count

1501904 bp

Genome Length

6155226 bp

Protein-coding Genes

5135 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolases family 39SAMN05444682_103380Not AvailableNegative2168267 - 216970953826.9
glycosyl hydrolases family 39SAMN05444682_103381Not AvailableNegative2169723 - 217110252929.1
starch-binding associating with outer membraneSAMN05444682_103382Not AvailableNegative2171134 - 217275661672.1
tonb-linked outer membrane protein, susc/raga familySAMN05444682_103383Not AvailableNegative2172769 - 2175753109126.0
transcriptional regulator, iclr familySAMN05444682_103384Not AvailablePositive2176014 - 217675427602.8
y_y_y domain-containing proteinSAMN05444682_103385Not AvailableNegative2176776 - 2179661109838.0
outer membrane receptor proteins, mostly fe transportSAMN05444682_103386Not AvailableNegative2179954 - 218237790289.7
phage shock protein c (pspc) family proteinSAMN05444682_103387Not AvailableNegative2182574 - 218422962295.3
transcriptional regulator, padr familySAMN05444682_103388Not AvailableNegative2184243 - 218463814734.5
gliding motility-associated lipoprotein gldhSAMN05444682_103389Not AvailableNegative2184779 - 218525217918.1

Displaying genes 1761 – 1770 of 5188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.