Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone/menaquinone biosynthesis c-methylase ubie | SAMN05444682_103330 | Not Available | Negative | 2115104 - 2115934 | 31190.2 |
| hypothetical protein | SAMN05444682_103331 | Not Available | Negative | 2115973 - 2116770 | 29741.9 |
| ompa family protein | SAMN05444682_103332 | Not Available | Negative | 2116776 - 2118272 | 54377.4 |
| hypothetical protein | SAMN05444682_103333 | Not Available | Positive | 2118337 - 2119650 | 47348.4 |
| hypothetical protein | SAMN05444682_103334 | Not Available | Positive | 2119664 - 2120416 | 27662.7 |
| two component transcriptional regulator, lyttr family | SAMN05444682_103335 | Not Available | Negative | 2120535 - 2121251 | 27088.7 |
| tetratricopeptide repeat-containing protein | SAMN05444682_103336 | Not Available | Positive | 2121494 - 2123440 | 72800.5 |
| two component transcriptional regulator, luxr family | SAMN05444682_103337 | Not Available | Positive | 2123517 - 2124146 | 23428.8 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05444682_103338 | Not Available | Negative | 2124115 - 2124741 | 24001.3 |
| two component transcriptional regulator, lyttr family | SAMN05444682_103339 | Not Available | Positive | 2124874 - 2125602 | 27374.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
