Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05444682_101157 | Not Available | Positive | 195209 - 195862 | 25206.3 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SAMN05444682_101158 | Not Available | Positive | 195859 - 197184 | 48090.5 |
| ycei-like domain-containing protein | SAMN05444682_101159 | Not Available | Positive | 197301 - 197933 | 22008.6 |
| cystathionine beta-synthase | SAMN05444682_101160 | Not Available | Negative | 197997 - 199361 | 50407.4 |
| amp nucleosidase | SAMN05444682_101161 | Not Available | Negative | 199372 - 200193 | 30099.7 |
| atp-dependent clp protease atp-binding subunit clpx | SAMN05444682_101162 | Not Available | Negative | 200209 - 201444 | 46171.2 |
| atp-dependent clp protease, protease subunit | SAMN05444682_101163 | Not Available | Negative | 201459 - 202154 | 25908.3 |
| type i restriction enzyme r protein n terminus (hsdr_n) | SAMN05444682_101164 | Not Available | Negative | 202313 - 202780 | 17995.9 |
| dna polymerase iii, delta subunit | SAMN05444682_101165 | Not Available | Positive | 202904 - 203911 | 38308.5 |
| hypothetical protein | SAMN05444682_101166 | Not Available | Positive | 203915 - 204472 | 20521.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
