Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter indicus |
| Strain | strain RK1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1604354 bp
Thymine Count
1596710 bp
Guanine Count
1452045 bp
Cytosine Count
1501904 bp
Genome Length
6155226 bp
Protein-coding Genes
5135 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05444682_103260 | Not Available | Positive | 1995447 - 1996445 | 36218.4 |
| heparinase ii/iii-like protein | SAMN05444682_103261 | Not Available | Positive | 1996546 - 1999245 | 100497.0 |
| chondroitin ac lyase | SAMN05444682_103262 | Not Available | Positive | 1999328 - 2001496 | 81821.6 |
| glycosyl hydrolase family 88 | SAMN05444682_103263 | Not Available | Positive | 2001537 - 2002721 | 43972.8 |
| heparinase ii/iii-like protein | SAMN05444682_103264 | Not Available | Positive | 2002734 - 2004629 | 70148.5 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN05444682_103265 | Not Available | Positive | 2004661 - 2005962 | 47475.6 |
| peptidase family m28 | SAMN05444682_103266 | Not Available | Negative | 2005966 - 2007258 | 47210.2 |
| hypothetical protein | SAMN05444682_103267 | Not Available | Negative | 2007267 - 2009150 | 71270.5 |
| starch-binding associating with outer membrane | SAMN05444682_103268 | Not Available | Negative | 2009178 - 2010728 | 57924.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444682_103269 | Not Available | Negative | 2010741 - 2014352 | 132344.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
